Translatome analysis in acute ischemic stroke: Astrocytes and microglia exhibit differences in poststroke alternative splicing of expressed transcripts
机构:[1]Capital Med Univ, Xuanwu Hosp, Natl Ctr Neurol Disorders, Dept Neurol, Beijing 100053, Peoples R China首都医科大学宣武医院[2]Beijing Municipal Geriatr Med Res Ctr, Beijing, Peoples R China[3]Minist Educ, Key Lab Neurodegenerat Dis, Beijing, Peoples R China[4]Chinese Inst Med Res, Beijing, Peoples R China
Astrocytes and microglia undergo dynamic and complex morphological and functional changes following ischemic stroke, which are instrumental in both inflammatory responses and neural repair. While gene expression alterations poststroke have been extensively studied, investigations into posttranscriptional regulatory mechanisms, specifically alternative splicing (AS), remain limited. Utilizing previously reported Ribo-Tag-seq data, this study analyzed AS alterations in poststroke astrocytes and microglia from young adult male and female mice. Our findings reveal that in astrocytes, compared to the sham group, 109 differential alternative splicing (DAS) events were observed at 4 h poststroke, which increased to 320 at day 3. In microglia, these numbers were 316 and 266, respectively. Interestingly, the disparity between DAS genes and differentially expressed genes is substantial, with fewer than 10 genes shared at both poststroke time points in astrocytes and microglia. Gene ontology enrichment analysis revealed the involvement of these DAS genes in diverse functions, encompassing immune response (Adam8, Ccr1), metabolism (Acsl6, Pcyt2, Myo5a), and developmental cell growth (App), among others. Selective DAS events were further validated by semiquantitative RT-PCR. Overall, this study comprehensively describes the AS alterations in astrocytes and microglia during the hyperacute and acute phases of ischemic stroke and underscores the significance of certain hub DAS events in neuroinflammatory processes. Utilizing RiboTag-seq translatome data from ischemic stroke mouse models, this study reveals dynamic alternative splicing (AS) changes in astrocytes and microglia at hyperacute (4 h) and acute (3 days) phases poststroke. These findings highlight the critical roles of AS in regulating poststroke neuroinflammation and morphological and functional transformations of glial cells, offering valuable insights for developing future therapies.image
基金:
National Key Research and Development Program of China [2021YFA1101403]; National Natural Science Foundation of China (NSFC) [82090043, 82104435, 82001258]; Project of Construction and Support for high- level Innovative Teams of Beijing Municipal Institutions [BPHR20220112]; Youth Beijing Scholar [NO.020]; Dengfeng Talent Program [DFL20220701]; Project for Innovation and Development of Beijing Municipal Geriatric Medical Research Center [11000023T000002041657]; Beijing Municipal Public Welfare Development and Reform Pilot Project for Medical Research Institutes [JYY2023- 7]; General Science and Technology Programme of Beijing Municipal Education Commission [KM202110025020]
第一作者机构:[1]Capital Med Univ, Xuanwu Hosp, Natl Ctr Neurol Disorders, Dept Neurol, Beijing 100053, Peoples R China[2]Beijing Municipal Geriatr Med Res Ctr, Beijing, Peoples R China
共同第一作者:
通讯作者:
通讯机构:[1]Capital Med Univ, Xuanwu Hosp, Natl Ctr Neurol Disorders, Dept Neurol, Beijing 100053, Peoples R China[2]Beijing Municipal Geriatr Med Res Ctr, Beijing, Peoples R China[3]Minist Educ, Key Lab Neurodegenerat Dis, Beijing, Peoples R China[4]Chinese Inst Med Res, Beijing, Peoples R China[*1]Department of Neurology, National Center for Neurological Disorders, Xuanwu Hospital Capital Medical University, Beijing 100053, China
推荐引用方式(GB/T 7714):
Jin Bingxue,Han Yilai,Xu Fang,et al.Translatome analysis in acute ischemic stroke: Astrocytes and microglia exhibit differences in poststroke alternative splicing of expressed transcripts[J].FASEB JOURNAL.2024,38(15):doi:10.1096/fj.202400341R.
APA:
Jin, Bingxue,Han, Yilai,Xu, Fang,Wang, Junjie,Zhao, Yunzhi...&Chai, Guoliang.(2024).Translatome analysis in acute ischemic stroke: Astrocytes and microglia exhibit differences in poststroke alternative splicing of expressed transcripts.FASEB JOURNAL,38,(15)
MLA:
Jin, Bingxue,et al."Translatome analysis in acute ischemic stroke: Astrocytes and microglia exhibit differences in poststroke alternative splicing of expressed transcripts".FASEB JOURNAL 38..15(2024)