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Translatome analysis in acute ischemic stroke: Astrocytes and microglia exhibit differences in poststroke alternative splicing of expressed transcripts

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机构: [1]Capital Med Univ, Xuanwu Hosp, Natl Ctr Neurol Disorders, Dept Neurol, Beijing 100053, Peoples R China [2]Beijing Municipal Geriatr Med Res Ctr, Beijing, Peoples R China [3]Minist Educ, Key Lab Neurodegenerat Dis, Beijing, Peoples R China [4]Chinese Inst Med Res, Beijing, Peoples R China
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关键词: alternative splicing astrocyte microglia stroke translatome

摘要:
Astrocytes and microglia undergo dynamic and complex morphological and functional changes following ischemic stroke, which are instrumental in both inflammatory responses and neural repair. While gene expression alterations poststroke have been extensively studied, investigations into posttranscriptional regulatory mechanisms, specifically alternative splicing (AS), remain limited. Utilizing previously reported Ribo-Tag-seq data, this study analyzed AS alterations in poststroke astrocytes and microglia from young adult male and female mice. Our findings reveal that in astrocytes, compared to the sham group, 109 differential alternative splicing (DAS) events were observed at 4 h poststroke, which increased to 320 at day 3. In microglia, these numbers were 316 and 266, respectively. Interestingly, the disparity between DAS genes and differentially expressed genes is substantial, with fewer than 10 genes shared at both poststroke time points in astrocytes and microglia. Gene ontology enrichment analysis revealed the involvement of these DAS genes in diverse functions, encompassing immune response (Adam8, Ccr1), metabolism (Acsl6, Pcyt2, Myo5a), and developmental cell growth (App), among others. Selective DAS events were further validated by semiquantitative RT-PCR. Overall, this study comprehensively describes the AS alterations in astrocytes and microglia during the hyperacute and acute phases of ischemic stroke and underscores the significance of certain hub DAS events in neuroinflammatory processes. Utilizing RiboTag-seq translatome data from ischemic stroke mouse models, this study reveals dynamic alternative splicing (AS) changes in astrocytes and microglia at hyperacute (4 h) and acute (3 days) phases poststroke. These findings highlight the critical roles of AS in regulating poststroke neuroinflammation and morphological and functional transformations of glial cells, offering valuable insights for developing future therapies.image

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出版当年[2023]版:
大类 | 2 区 生物学
小类 | 2 区 生化与分子生物学 2 区 生物学 3 区 细胞生物学
最新[2023]版:
大类 | 2 区 生物学
小类 | 2 区 生化与分子生物学 2 区 生物学 3 区 细胞生物学
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出版当年[2022]版:
Q1 BIOLOGY Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Q2 CELL BIOLOGY
最新[2023]版:
Q1 BIOLOGY Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Q2 CELL BIOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2022版] 出版当年五年平均 出版前一年[2021版] 出版后一年[2023版]

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第一作者机构: [1]Capital Med Univ, Xuanwu Hosp, Natl Ctr Neurol Disorders, Dept Neurol, Beijing 100053, Peoples R China [2]Beijing Municipal Geriatr Med Res Ctr, Beijing, Peoples R China
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通讯机构: [1]Capital Med Univ, Xuanwu Hosp, Natl Ctr Neurol Disorders, Dept Neurol, Beijing 100053, Peoples R China [2]Beijing Municipal Geriatr Med Res Ctr, Beijing, Peoples R China [3]Minist Educ, Key Lab Neurodegenerat Dis, Beijing, Peoples R China [4]Chinese Inst Med Res, Beijing, Peoples R China [*1]Department of Neurology, National Center for Neurological Disorders, Xuanwu Hospital Capital Medical University, Beijing 100053, China
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