Identification of biomarker microRNAs for predicting the response colorectal cancer to neoadjuvant chemoradiotherapy based on microRNA regulatory network
机构:[1]Department of Radiotherapy and Oncology, Second Affiliated Hospital of Soochow University, Suzhou, China[2]Institute of Radiotherapy and Oncology, Soochow University, Suzhou, China[3]Suzhou Key Laboratory for Radiation Oncology, Suzhou, China[4]Center for Systems Biology, Soochow University, Suzhou, China[5]Institute of Biological Sciences and Biotechnology, Donghua University, Shanghai, China[6]School of Chemistry, Biology and Material Engineering, Suzhou University of Science and Technology, Suzhou, China[7]Key laboratory of Systems Biology, Shanghai Institute of Biological Sciences, Chinese Academy of Sciences, Shanghai, China
Preoperative radiotherapy or chemoradiotherapy has become a standard procedure for treatment of patients with locally advanced colorectal cancer (CRC). However, patients' responses to treatment are different and personalized. MicroRNAs (miRNAs) are promising biomarkers for predicting personalized responses. In this study, we collected 30 publicly reported miRNAs associated with chemoradiotherapy of CRC. We extracted 46 differentially expressed miRNAs from samples of responders and non-responders to preoperative radiotherapy from the Gene Expression Omnibus dataset (Student's t test, p-value < 0.05 and | fold-change| > 2). We performed a systematic and integrative bioinformatics analysis to identify biomarker miRNAs for prediction of CRC responses to chemoradiotherapy. Using the bioinformatics model, miR-198, miR-765, miR-671-5p, miR-630, miR-371-5p, miR-575, miR-202, miR-483-5p and miR-513a-5p were screened as putative biomarkers for treatment response. Literature validation and functional enrichment analysis were exploited to confirm the reliability of the predicted miRNAs. Quantitative polymerase chain reaction showed that seven of the candidates were significantly differentially expressed between radiosensitive and insensitive CRC cell lines. The unique target genes of miR-198 and miR-765 were altered significantly upon transfection of specific miRNA mimics in the radiosensitive cell line. These results demonstrated the predictive power of our model and suggested that miR-198, miR-765, miR-630, miR-371-5p, miR-575, miR-202 and miR-513a-5p could be used for predicting the response of CRC to preoperative chemoradiotherapy.
基金:
This project was supported by the Second Affiliated Hospital of Soochow University Preponderant Clinic Discipline Group Project funding (XKQ2015005), the Project of Suzhou Science and Technology Development Plan (SYS201342) and the National Natural Science Foundation of China grants (31670851, 31470821, 91530320, 31400712).
第一作者机构:[1]Department of Radiotherapy and Oncology, Second Affiliated Hospital of Soochow University, Suzhou, China[2]Institute of Radiotherapy and Oncology, Soochow University, Suzhou, China[3]Suzhou Key Laboratory for Radiation Oncology, Suzhou, China
共同第一作者:
通讯作者:
通讯机构:[1]Department of Radiotherapy and Oncology, Second Affiliated Hospital of Soochow University, Suzhou, China[2]Institute of Radiotherapy and Oncology, Soochow University, Suzhou, China[3]Suzhou Key Laboratory for Radiation Oncology, Suzhou, China[4]Center for Systems Biology, Soochow University, Suzhou, China[7]Key laboratory of Systems Biology, Shanghai Institute of Biological Sciences, Chinese Academy of Sciences, Shanghai, China
推荐引用方式(GB/T 7714):
Zhu Yaqun,Peng Qiliang,Lin Yuxin,et al.Identification of biomarker microRNAs for predicting the response colorectal cancer to neoadjuvant chemoradiotherapy based on microRNA regulatory network[J].ONCOTARGET.2017,8(2):2233-2248.doi:10.18632/oncotarget.13659.
APA:
Zhu, Yaqun,Peng, Qiliang,Lin, Yuxin,Zou, Li,Shen, Peipei...&Shen, Bairong.(2017).Identification of biomarker microRNAs for predicting the response colorectal cancer to neoadjuvant chemoradiotherapy based on microRNA regulatory network.ONCOTARGET,8,(2)
MLA:
Zhu, Yaqun,et al."Identification of biomarker microRNAs for predicting the response colorectal cancer to neoadjuvant chemoradiotherapy based on microRNA regulatory network".ONCOTARGET 8..2(2017):2233-2248