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Genomic characteristics of pancreatic squamous cell carcinoma, an investigation by using high throughput sequencing after insolution hybrid capture

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机构: [1]Department of Oncology, The First Affiliated Hospital of Soochow University, Suzhou 215006, China [2]Department of Radiation Oncology, The First Affiliated Hospital of Soochow University, Suzhou 215006, China [3]Department of Pathology, The Second Affiliated Hospital of Soochow University, Suzhou 215006, China [4]Department of Pathology, Renji Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China [5]Department of General Surgery, The First Affiliated Hospital of Soochow University, Suzhou 215006, China [6]Department of Respiratory Medicine, The First Affiliated Hospital of Soochow University, Suzhou 215006, China [7]Department of Pathology, The First Affiliated Hospital of Soochow University, Suzhou 215006, China [8]Department of Oncology, The First Affiliated Hospital of Zhejiang Chinese Medicine University, Hangzhou 310006, China [9]Department of Hematology, The First Affiliated Hospital of Soochow University, Suzhou 215006, China [10]Xi'an Tianlong Science and Technology Co., Ltd., Xi'an 710018, China [11]PREMED Key Laboratory for Precision Medicine, Soochow University, Suzhou 215021, China [12]Jiangsu Institute of Clinical Immunology, Suzhou 215006, China [13]Institute of Medical Biotechnology, Soochow University, Suzhou 215021, China
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关键词: High throughput sequencing (HTS) In-solution hybrid capture Pancreatic adenocarcinoma Pancreatic squamous cell carcinoma

摘要:
Squamous cell carcinoma (SCC) of pancreas is a rare histotype of pancreatic ductal carcinoma which is distinct from pancreatic adenocarcinoma (AC). Although there are standard treatments for pancreatic AC, no precise therapies exist for pancreatic SCC. Here, we screened 1033 cases of pancreatic cancer and identified 2 cases of pure SCC, which were pathologically diagnosed on the basis of finding definite intercellular bridges and/or focal keratin peal formation in the tumor cells. Immunohistochemistry assay confirmed the positive expression of CK5/6 and p63 in pancreatic SCC. To verify the genomic characteristics of pancreatic SCC, we employed in-solution hybrid capture targeting 137 cancer-related genes accompanied by high throughput sequencing (HTS) to compare the different genetic variants in SCC and AC of pancreas. We compared the genetic alterations of known biomarkers of pancreatic adenocarcinoma in different pancreatic cancer tissues, and identified nine mutated genes in SCC of pancreas: C7orf70, DNHD1, KPRP, MDM4, MUC6, OR51Q1, PTPRD, TCF4, TET2, and nine genes (ABCB1, CSF1R, CYP2C18, FBXW7, ITPA, KIAA0748, SOD2, SULT1A2, ZNF142) that are mutated in pancreatic AC. This study may have taken one step forward on the discovery of potential biomarkers for the targeted treatment of SCC of the pancreas.

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出版当年[2016]版:
大类 | 1 区 医学
小类 | 2 区 细胞生物学 2 区 肿瘤学
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出版当年[2015]版:
Q1 CELL BIOLOGY Q1 ONCOLOGY
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影响因子: 最新[2023版] 最新五年平均 出版当年[2015版] 出版当年五年平均 出版前一年[2014版] 出版后一年[2016版]

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第一作者机构: [1]Department of Oncology, The First Affiliated Hospital of Soochow University, Suzhou 215006, China
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通讯机构: [1]Department of Oncology, The First Affiliated Hospital of Soochow University, Suzhou 215006, China [11]PREMED Key Laboratory for Precision Medicine, Soochow University, Suzhou 215021, China [12]Jiangsu Institute of Clinical Immunology, Suzhou 215006, China [13]Institute of Medical Biotechnology, Soochow University, Suzhou 215021, China
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