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The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report

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资源类型：

收录情况： ◇ SCIE

作者：
Chernomoretz, Ariel[2] * ; Stolovitzky, Gustavo[1,51] ; Labaj, Pawel P.[4] ; Graf, Alexandra B.[5] ; Darling, Aaron[3] ; Burke, Catherine[3] ; Noushmehr, Houtan[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51] ; Moraes, Milton Ozorio[6] ; Dias-Neto, Emmanuel[7] ; Guo, Yongli[8,9] ; Xie, Zhi[9,10] ; Lee, Patrick[11] ; Shi, Leming[12] ; Ruiz-Perez, Carlos A.[13] ; Mercedes Zambrano, Maria[13] ; Siam, Rania[14] ; Ouf, Amged[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51] ; Richard, Hugues[15] ; Lafontaine, Ingrid[15] ; Wieler, Lothar H.[16] ; Semmler, Torsten[16] ; Ahmed, Niyaz[17] ; Prithi-viraj, Bharath[18] ; Nedunuri, Narasimha[19] ; Mehr, Shaadi[20] ; Banihashemi, Kambiz[21] ; Lista, Florigio[22] ; Anselmo, Anna[22] ; Suzuki, Haruo[23,24] ; Kuroda, Makoto[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51] ; Yamashita, Riu[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51] ; Sato, Yukoto[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51] ; Kaminuma, Eli[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51] ; Alpuche Aranda, Celia M.[25] ; Martinez, Jesus[25] ; Dada, Christopher[26] ; Dybwad, Marius[27] ; Oliveira, Manuela[28,29] ; Schuster, Stephan[32] ; Siwo, Geoffrey H.[33] ; Jang, Soojin[34] ; Seo, Sung Chul[35] ; Hwang, Sung Ho[36] ; Ossowski, Stephan[37] ; Bezdan, Daniela[37,38] ; Chaker, Salama[30,31] ; Chatziefthimiou, Aspassia D.[30,31] ; Udekwu, Klas[39] ; Liungdahl, Per[39] ; Sezerman, Ugur[40] ; Meydan, Cem[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51] ; Elhaik, Eran[41] ; Gonnet, Gaston[42] ; Schriml, Lynn M.[50] ; Mongodin, Emmanuel[43] ; Huttenhower, Curtis[44] ; Gilbert, Jack[45] ; Mason, Christopher E.[47] ; Eisen, Jonathan[48] ; Hirschberg, David[49] ; Hernandez, Mark[46] ;
机构： [1]Icahn Sch Med Mt Sinai, Genet & Genom Sci, New York, NY USA; [2]Univ Buenos Aires, Dept Fis, Buenos Aires, DF, Argentina; [3]Univ Technol Sydney, Computat Metagen, Sydney, NSW, Australia; [4]Boku Univ Vienna, Bioinformat, Vienna, Austria; [5]Univ Appl Sci, Bioinformat, Vienna, Austria; [6]Univ Sao Paulo, Dept Genet, Lab Epigen & Bioinformat, BR-14049 Ribeirao Preto, Brazil; [7]AC Camargo Canc Ctr, Med Genom, Sao Paulo, Brazil; [8]Capital Med Univ, Beijing Childrens Hospital, Beijing, Peoples R China; [9]Capitalbio Corp, Translat Bioinformat Res Inst, Beijing, Peoples R China; [10]Sun Yat Sen Univ, Guangdong Prov Key Lab Ophthalmol & Visual Sci, State Key Lab Ophthalmol,Sch Public Hlth, Zhognshan Ophthalm Ctr,Ctr Precis Med, Guangzhou, Guangdong, Peoples R China; [11]City Univ Hong Kong, Sch Energy & Environm, Hong Kong, Hong Kong, Peoples R China; [12]Fudan Univ, Sch Life Sci, Shanghai 200433, Peoples R China; [13]Corp Corpogen, Bogota, Colombia; [14]Amer Univ Cairo, Dept Biol, Cairo, Egypt; [15]Univ Paris 06, Sorbonne Univ, Inst Biol Paris Seine, CNRS,Lab Computat & Quantitat Biol, Paris, France; [16]Robert Koch Inst, Publ Hlth, Berlin, Germany; [17]Univ Hyderabad, Dept Biotechnol & Bioinformat, Hyderabad 500134, Andhra Pradesh, India; [18]Noble Foundation, Dept Biotechnol & Bioinformat, Hyderabad, Andhra Pradesh, India; [19]ClonzBio Tech, Dept Biotechnol & Bioinformat, Hyderabad, Andhra Pradesh, India; [20]Amer Museum Nat Hist, Ecol, Tehran, Iran; [21]Minist Sci, Med Sci, Tehran, Iran; [22]Army Med & Vet Res Ctr, Mol Biol Sect, Rome, Italy; [23]Keio Univ, Inst Adv Biosci, Sendai, Miyagi, Japan; [24]Keio Univ, Inst Adv Biosci, Tokyo, Japan; [25]IANPHI Mexico Secretariat, Natl Inst Publ Hlth, Mexico City, DF, Mexico; [26]Univ Waikato, Environm Res Inst, Auckland, New Zealand; [27]Norwegian Def Res Estab FFI, Protect & Societal Secur Div, Oslo, Norway; [28]Univ Porto, Dept Biol, Populat Genet & Evolut Grp i3S, Lisbon, Portugal; [29]Univ Porto, Dept Biol, Populat Genet & Evolut Grp i3S, Rua Campo Alegre 823, P-4100 Porto, Portugal; [30]Weill Cornell Med Coll Qatar, Ecology, Doha, Qatar; [31]Weill Cornell Med Coll Qatar, Med, Doha, Qatar; [32]Penn State Univ, Biochem & Mol Biol, Singapore, Singapore; [33]IBM Corp, Watson Res, Johannesburg, South Africa; [34]Inst Pasteur Korea, Microbiol, Seoul, South Korea; [35]Korea Univ, Coll Med, Inst Allergy & Immunol, Seoul 136705, South Korea; [36]Natl Canc Ctr, Canc Risk Appraisal & Prevent Branch, Seoul, South Korea; [37]Ctr Genom Regulat CRG, Barcelona Inst Sci & Technol, Genom & Epigen Variat, Dr Aiguader 88, Barcelona 08003, Spain; [38]Univ Pompeu Fabra, Genom & Epigen Variat, Barcelona, Spain; [39]Stockholm Univ, Dept Mol Biosci, Wenner Gren Inst, S-10691 Stockholm, Sweden; [40]Acibadem Univ, Dept Biostat & Med Informat, Izmir, Turkey; [41]Univ Sheffield, Dept Anim & Plant Sci, Sheffield S10 2TN, S Yorkshire, England; [42]Swiss Fed Inst Technol, Genet, Montevideo, Uruguay; [43]Univ Maryland, Sch Med, Inst Genome Sci, Baltimore, MD 21201 USA; [44]Harvard TH Chan Sch Publ Hlth, Biostat, Boston, MA USA; [45]Argonne Natl Lab, Microbial Ecol, Chicago, IL USA; [46]Univ Colorado, Mech Engn, Denver, CO 80202 USA; [47]Weill Cornell Med, Physiol & Biophys, New York, NY USA; [48]Univ Calif Davis, Dept Interdisciplinary Arts & Sci, Sacramento, CA USA; [49]Univ Washington, Dept Genet & Genom, Seattle, WA 98195 USA; [50]Univ Maryland, Sch Med, Inst Genome Sci, Washington, DC USA; [51]Icahn Sch Med Mt Sinai, Genet & Genom Sci, New York, NY USA
出处：
DOI： 10.1186/s40168-016-0168-z
ISSN：

关键词： Microbiome Biosynthetic gene clusters Built environment Next-generation sequencing Antimicrobial resistance markers

摘要：
The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium is a novel, interdisciplinary initiative comprised of experts across many fields, including genomics, data analysis, engineering, public health, and architecture. The ultimate goal of the MetaSUB Consortium is to improve city utilization and planning through the detection, measurement, and design of metagenomics within urban environments. Although continual measures occur for temperature, air pressure, weather, and human activity, including longitudinal, cross-kingdom ecosystem dynamics can alter and improve the design of cities. The MetaSUB Consortium is aiding these efforts by developing and testing metagenomic methods and standards, including optimized methods for sample collection, DNA/RNA isolation, taxa characterization, and data visualization. The data produced by the consortium can aid city planners, public health officials, and architectural designers. In addition, the study will continue to lead to the discovery of new species, global maps of antimicrobial resistance (AMR) markers, and novel biosynthetic gene clusters (BGCs). Finally, we note that engineered metagenomic ecosystems can help enable more responsive, safer, and quantified cities.

基金：
Alfred P. Sloan FoundationAlfred P. Sloan Foundation [2015-13964]; National Institutes of HealthUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USA [F31GM111053, R01NS076465, R25EB020393]; Promega; CosmosID; Illumina; Copan; QIAGEN
语种：
外文
WOS：
中科院(CAS)分区：
出版当年[2015]版：
无
最新[2023]版：
大类 | 1 区 生物学
小类 | 1 区 微生物学
JCR分区：
出版当年[2014]版：
无
最新[2023]版：
Q1 MICROBIOLOGY

影响因子： 最新[2023版] 最新五年平均 出版当年[2014版] 出版当年五年平均 出版前一年[2013版] 出版后一年[2015版]

第一作者：
第一作者机构： [2]Univ Buenos Aires, Dept Fis, Buenos Aires, DF, Argentina;
通讯作者：
通讯机构： [47]Weill Cornell Med, Physiol & Biophys, New York, NY USA;
推荐引用方式(GB/T 7714)：
Chernomoretz Ariel,Stolovitzky Gustavo,Labaj Pawel P.,et al.The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report[J].MICROBIOME.2016,4:-.doi:10.1186/s40168-016-0168-z.
APA：
Chernomoretz, Ariel,Stolovitzky, Gustavo,Labaj, Pawel P.,Graf, Alexandra B.,Darling, Aaron...&Hernandez, Mark.(2016).The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report.MICROBIOME,4,
MLA：
Chernomoretz, Ariel,et al."The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report".MICROBIOME 4.(2016):-

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