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Identification and validation of ferroptosis-associated gene-based on immune score as prognosis markers for hepatocellular carcinoma patients

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机构: [1]Department of General Surgery, Xuanwu Hospital, Capital Medical University, Beijing, China [2]Department of Thoracic Surgery, Xuanwu Hospital, Capital Medical University, Beijing, China
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关键词: Hepatocellular carcinoma (HCC) The Cancer Genome Atlas (TCGA) ferroptosis signature prognosis

摘要:
Background: Ferroptosis has been found to affect the prognosis and immunotherapy of hepatocellular carcinoma (HCC). However, the association between ferroptosis-related genes and infiltrating immune cells in tumor immune microenvironment (TIME) has not been fully elucidated. This study aimed at establishing a prediction model for the progression of HCC using ferroptosis-associated genes based on immune score. Methods: Transcriptomic, mutation and clinicopathological information were downloaded from TCGA and International Cancer Genome Consortium (ICGC) for this study. Construction of the prediction model was done by Lasso regression analysis. Estimation of the clustering ability of the prediction model was done by t-distributed stochastic neighbor embedding (t-SNE) and principal component analysis (PCA) analyses. Assessment of the accuracy of the prediction model was done by receiver operating characteristic (ROC) and Kaplan-Meier curves. Results: A prediction model was formulated utilizing three ferroptosis-related genes (G6PD, SAT1 and SLC1A5). The model independently predicted the overall survival (OS). Differentially expressed genes (DEGs) linked to based on Kyoto Encyclopedia of Genes and Genomes (KEGG) and gene ontology (GO) analyses immune-associated pathways and functions. Single-sample gene set enrichment analysis (ssGSEA) strategy further confirmed the model was related to immune-associated functions as well as immune cell infiltration. Conclusions: The three ferroptosis-associated gene-based prediction model was good at predicting the OS outcomes of HCC, improve HCC prognostication and treatment in the clinic.

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出版当年[2020]版:
大类 | 3 区 医学
小类 | 4 区 胃肠肝病学 4 区 肿瘤学
最新[2023]版:
大类 | 4 区 医学
小类 | 4 区 胃肠肝病学 4 区 肿瘤学
JCR分区:
出版当年[2019]版:
Q3 GASTROENTEROLOGY & HEPATOLOGY Q3 ONCOLOGY
最新[2023]版:
Q3 ONCOLOGY Q3 GASTROENTEROLOGY & HEPATOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2019版] 出版当年五年平均 出版前一年[2018版] 出版后一年[2020版]

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第一作者机构: [1]Department of General Surgery, Xuanwu Hospital, Capital Medical University, Beijing, China
通讯作者:
通讯机构: [1]Department of General Surgery, Xuanwu Hospital, Capital Medical University, Beijing, China [*1]General Surgery, Xuanwu Hospital, Capital Medical University, No. 45, Changchun Street, Xicheng District, Beijing, China
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