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A Novel Method to Identify Differential Pathways in Hippocampus Alzheimer's Disease

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收录情况: ◇ SCIE

机构: [1]Tianjin First Cent Hosp, Dept Neurol, Tianjin, Peoples R China; [2]Capital Med Univ, Dept Intervent Neuroradiol, Beijing Tiantan Hosp, Beijing, Peoples R China
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关键词: Alzheimer Disease Neural Pathways Protein Interaction Maps

摘要:
Background: Alzheimer's disease (AD) is the most common type of dementia. The objective of this paper is to propose a novel method to identify differential pathways in hippocampus AD. Material/Methods: We proposed a combined method by merging existed methods. Firstly, pathways were identified by four known methods (DAVID, the neaGUI package, the pathway-based co-expressed method, and the pathway network approach), and differential pathways were evaluated through setting weight thresholds. Subsequently, we combined all pathways by a rank-based algorithm and called the method the combined method. Finally, common differential pathways across two or more of five methods were selected. Results: Pathways obtained from different methods were also different. The combined method obtained 1639 pathways and 596 differential pathways, which included all pathways gained from the four existing methods; hence, the novel method solved the problem of inconsistent results. Besides, a total of 13 common pathways were identified, such as metabolism, immune system, and cell cycle. Conclusions: We have proposed a novel method by combining four existing methods based on a rank product algorithm, and identified 13 significant differential pathways based on it. These differential pathways might provide insight into treatment and diagnosis of hippocampus AD.

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出版当年[2016]版:
大类 | 4 区 医学
小类 | 4 区 医学:研究与实验
最新[2023]版:
大类 | 4 区 医学
小类 | 4 区 医学:研究与实验
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出版当年[2015]版:
Q3 MEDICINE, RESEARCH & EXPERIMENTAL
最新[2023]版:
Q3 MEDICINE, RESEARCH & EXPERIMENTAL

影响因子: 最新[2023版] 最新五年平均 出版当年[2015版] 出版当年五年平均 出版前一年[2014版] 出版后一年[2016版]

第一作者:
第一作者机构: [1]Tianjin First Cent Hosp, Dept Neurol, Tianjin, Peoples R China;
通讯作者:
通讯机构: [2]Capital Med Univ, Dept Intervent Neuroradiol, Beijing Tiantan Hosp, Beijing, Peoples R China
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